PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Data Source
The deadline for species collection was Jun. 15th, 2016. 156 species (157 organisms) with public available genome sequences and 9 species with UniGene entries more than 8000 and important in economy were collected. For 156 species with genome sequences, gene sets annotated by corresponding genome projects are used. For 9 species without genome sequences, a protein dataset was integrated from UniGene EST and PlantGDB PUT for each species (see methods).

Data source and version of sequences used
Species Common name Genome Anotation UniGene PlantGDB
-IKGC--
Tausch's goatgrassBGI--
-VEGI(v2.5)--
grain amaranthBYU--
-TAGP--
pineappleJGI(v3)--
columbineJGI(v3.1)--
-JGI(v1.1)--
lyrate rockcressJGI(v1.0)--
thale cressTAIR10--
alpine rockcressMPIPBR--
-NCGR_PGC--
-NCGR_PGC--
-BGI--
-NGD--
-ORCAE--
beetTBVR(v2)--
-JGI(v1.2)--
purple false bromeJGI(v3.1)--
-JGI(v1.1)--
rapeGenoscope(v5)--
-NCBI 100--
field mustardNCBI 100--
-IIPG--
false flaxCSGP--
-CCBR--
-JGI(v1.1)--
-JGI(v1.0)--
chilli pepperPEP(v1.55)--
papayaASGPB--
Chinese chestnutTHGP(v1.1)--
Madagascar periwinkleMPGR--
-JGI(v5.5)--
-JGI(v1.0)--
-NCBI 101--
-ICuGI(v1)--
-ICGC(v1.0)--
Valencia orangeICGC(v1.1)--
-JGI(v2)--
robusta coffeeCGSC--
-MELONOMICS(v3.5)--
cucumberJGI, V1.0--
Queen Anne's laceARS-USDA(v2.0)--
carnationDCA(v1.0)--
-Dichan(v1)--
-CNU(v1)--
-JGI(v1.0)--
African oil palmOG--
tefTef(v3)--
Murray red gumECGD--
-JGI(v2.0)--
-JGI(v1.0)--
strawberrykazusa(v1.1)--
-GDR(v1.1)--
-LSMU--
soybeanWm82.a2.v1--
wild soybeanTCUHK--
-GPGRP--
tree cottonBGI-A2(v1.0)--
upland cottonNAU-NBI(v1.1)--
-JGI(v2.1)--
-UBC--
barleyIBSC(v1.0)--
European hopHOPBASE(v1.1)--
-Kazusa(v1.0)--
-Kazusa(v4.5)--
English walnutJHU--
-JGI(v1.1)--
-JGI(v1.1)--
-KFGP(v1.0)--
-OGE--
-BGI(v1.0)--
-Kazusa(v3.0)--
appleGDR(v1.0)--
cassavaJGI(v6.1)--
liverwortJGI(v3.1)--
barrel medicMt4.0v1--
-JGI(v3.0)--
-JGI(v3.0)--
spotted monkey flowerJGI(v2.0)--
-BU--
-BGI--
-CIRAD--
-CAS(v2.0)--
-BTI--
wood tobaccoNCBI 100--
tobaccoNCBI 100--
-NCBI 100--
holy basilOteDB--
-JGI(v1.0)--
-OGE--
-OGE(v1.4)--
-AGI1.1--
-OGE--
long-staminate riceBGI--
-OGE--
-OGE--
-OGE--
common wild riceOGE--
Indian riceRIS, Glean--
Japanese riceMSU(v7)--
-JGI(v2.0)--
-JGI(v2.0)--
-JGI(v2.0)--
-JGI(v2.0)--
switchgrassJGI(v3.1)--
large white petuniaSGN(v1.6.2)--
-SGN(v1.0.1)--
-BGI--
-JGI(v1.0)--
-PDK(v3)--
-ICBR(v1.0)--
-COSMOSS(v3.3)--
-ConGenIE(v1.0)--
-Rutgers--
Euphrates poplarLZU--
black cottonwoodJGI(v3.0)--
Japanese apricotBGI--
peachJGI(v2.1)--
Douglas-firPRS(v1.0)--
-CPETR(v1.0)--
jointed charlockMSU--
radishRGD--
castor beanJCVI(v0.1)--
purple osierJGI(v1.0)--
Chinese salviaNDCTCM--
-JGI(v1.0)--
beniseedNCBI 100--
-JGI(v2.2)--
-JGI(v1.1)--
-VEGI(v1)--
tomatoITAG(v2.3)--
aubergineEGD--
-spenn(v2.0)--
currant tomatoCSHL--
potatoPGSC--
sorghumJGI(v3.1)--
-JGI(v0.5)--
spinachTBVR(v1)--
great duckweedMIPS/IBIS(v2)--
-NCBI 100--
-thellungiella(v2.0)--
cocoaCGD(v1.1)--
peavine cloverJGI(v2)--
WheatIWGSC(v2.2)--
-BGI--
-UGSP--
adzuki beanSNU(v3)--
mung beanSNU(v6)--
wine grapeGenoscope--
-JGI(v2.1)--
maizeMaizeSequence(5b)--
Chinese jujubeNCBI 100--
-JGI(v2.2)--
Japanese lawn grassZGD(v1.1)--
Japanese carpet grassZGD(v1.0)--
-ZGD(v1.0)--
peanut-Build #4171a
sweet wormwood-Build #6183a
sunflower-Build #12169a
garden lettuce-Build #17187a
white spruce-Build #15175a
Sitka spruce-Build #16183a
loblolly pine-Build #13157a
sugarcane-Build #15157a
cowpea-Build #4167a