PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Zoysia pacifica
bHLH Family
Species TF ID Description
Zpz_sc00002.1.g00830.1.sm.mkhcbHLH family protein
Zpz_sc00002.1.g01360.1.am.mkbHLH family protein
Zpz_sc00003.1.g00570.1.sm.mkbHLH family protein
Zpz_sc00003.1.g01830.1.sm.mkhcbHLH family protein
Zpz_sc00011.1.g00130.1.am.mkbHLH family protein
Zpz_sc00011.1.g00640.1.sm.mkbHLH family protein
Zpz_sc00013.1.g00680.1.sm.mkhcbHLH family protein
Zpz_sc00013.1.g01050.1.sm.mkhcbHLH family protein
Zpz_sc00015.1.g00420.1.am.mkbHLH family protein
Zpz_sc00016.1.g01110.1.sm.mkbHLH family protein
Zpz_sc00017.1.g00510.1.sm.mkhcbHLH family protein
Zpz_sc00017.1.g00910.1.am.mkbHLH family protein
Zpz_sc00018.1.g00590.1.am.mkbHLH family protein
Zpz_sc00020.1.g00110.1.sm.mkbHLH family protein
Zpz_sc00033.1.g00720.1.am.mkbHLH family protein
Zpz_sc00036.1.g00350.1.am.mkbHLH family protein
Zpz_sc00045.1.g00490.1.am.mkbHLH family protein
Zpz_sc00047.1.g00090.1.am.mkbHLH family protein
Zpz_sc00054.1.g00310.1.am.mkbHLH family protein
Zpz_sc00055.1.g00440.1.sm.mkhcbHLH family protein
Zpz_sc00056.1.g00180.1.am.mkbHLH family protein
Zpz_sc00057.1.g00020.1.am.mkbHLH family protein
Zpz_sc00060.1.g00580.1.sm.mkbHLH family protein
Zpz_sc00060.1.g00640.1.sm.mkhcbHLH family protein
Zpz_sc00080.1.g00290.1.am.mkbHLH family protein
Zpz_sc00092.1.g00230.1.am.mkbHLH family protein
Zpz_sc00094.1.g00070.1.am.mkbHLH family protein
Zpz_sc00097.1.g00580.1.sm.mkbHLH family protein
Zpz_sc00103.1.g00280.1.sm.mkbHLH family protein
Zpz_sc00109.1.g00280.1.am.mkbHLH family protein
Zpz_sc00109.1.g00620.1.am.mkbHLH family protein
Zpz_sc00110.1.g00360.1.sm.mkbHLH family protein
Zpz_sc00119.1.g00240.1.am.mkbHLH family protein
Zpz_sc00119.1.g00530.1.am.mkbHLH family protein
Zpz_sc00120.1.g00040.1.am.mkbHLH family protein
Zpz_sc00124.1.g00380.1.sm.mkbHLH family protein
Zpz_sc00127.1.g00260.1.am.mkbHLH family protein
Zpz_sc00132.1.g00550.1.am.mkbHLH family protein
Zpz_sc00134.1.g00210.1.sm.mkhcbHLH family protein
Zpz_sc00141.1.g00240.1.am.mkbHLH family protein
Zpz_sc00142.1.g00020.1.am.mkbHLH family protein
Zpz_sc00148.1.g00510.1.sm.mkhcbHLH family protein
Zpz_sc00157.1.g00180.1.sm.mkbHLH family protein
Zpz_sc00179.1.g00070.1.am.mkbHLH family protein
Zpz_sc00188.1.g00220.1.sm.mkhcbHLH family protein
Zpz_sc00188.1.g00230.1.am.mkbHLH family protein
Zpz_sc00217.1.g00060.1.sm.mkhcbHLH family protein
Zpz_sc00218.1.g00160.1.am.mkbHLH family protein
Zpz_sc00218.1.g00220.1.sm.mkhcbHLH family protein
Zpz_sc00227.1.g00450.1.am.mkbHLH family protein
Zpz_sc00236.1.g00310.1.sm.mkbHLH family protein
Zpz_sc00236.1.g00450.1.sm.mkbHLH family protein
Zpz_sc00239.1.g00170.1.am.mkbHLH family protein
Zpz_sc00239.1.g00180.1.sm.mkbHLH family protein
Zpz_sc00242.1.g00250.1.sm.mkbHLH family protein
Zpz_sc00246.1.g00030.1.am.mkbHLH family protein
Zpz_sc00259.1.g00230.1.am.mkbHLH family protein
Zpz_sc00261.1.g00220.1.sm.mkbHLH family protein
Zpz_sc00264.1.g00260.1.sm.mkhcbHLH family protein
Zpz_sc00274.1.g00310.1.am.mkbHLH family protein
Zpz_sc00276.1.g00030.1.am.mkbHLH family protein
Zpz_sc00279.1.g00290.1.sm.mkbHLH family protein
Zpz_sc00286.1.g00240.1.sm.mkhcbHLH family protein
Zpz_sc00286.1.g00350.1.sm.mkbHLH family protein
Zpz_sc00301.1.g00450.1.sm.mkhcbHLH family protein
Zpz_sc00304.1.g00040.1.am.mkbHLH family protein
Zpz_sc00321.1.g00020.1.sm.mkhcbHLH family protein
Zpz_sc00341.1.g00300.1.sm.mkbHLH family protein
Zpz_sc00363.1.g00080.1.am.mkbHLH family protein
Zpz_sc00370.1.g00310.1.sm.mkhcbHLH family protein
Zpz_sc00371.1.g00020.1.am.mkbHLH family protein
Zpz_sc00373.1.g00400.1.sm.mkbHLH family protein
Zpz_sc00382.1.g00190.1.am.mkbHLH family protein
Zpz_sc00385.1.g00190.1.am.mkbHLH family protein
Zpz_sc00389.1.g00270.1.am.mkbHLH family protein
Zpz_sc00408.1.g00040.1.am.mkbHLH family protein
Zpz_sc00451.1.g00050.1.am.mkbHLH family protein
Zpz_sc00471.1.g00160.1.sm.mkhcbHLH family protein
Zpz_sc00471.1.g00280.1.sm.mkhcbHLH family protein
Zpz_sc00475.1.g00010.1.am.mkbHLH family protein
Zpz_sc00479.1.g00170.1.sm.mkbHLH family protein
Zpz_sc00495.1.g00340.1.sm.mkhcbHLH family protein
Zpz_sc00501.1.g00060.1.am.mkhcbHLH family protein
Zpz_sc00511.1.g00010.1.am.mkbHLH family protein
Zpz_sc00516.1.g00030.1.am.mkbHLH family protein
Zpz_sc00546.1.g00280.1.am.mkhcbHLH family protein
Zpz_sc00551.1.g00160.1.am.mkbHLH family protein
Zpz_sc00553.1.g00170.1.sm.mkhcbHLH family protein
Zpz_sc00554.1.g00070.1.am.mkbHLH family protein
Zpz_sc00554.1.g00150.1.am.mkbHLH family protein
Zpz_sc00576.1.g00110.1.am.mkbHLH family protein
Zpz_sc00588.1.g00150.1.sm.mkbHLH family protein
Zpz_sc00591.1.g00240.1.sm.mkbHLH family protein
Zpz_sc00606.1.g00040.1.sm.mkbHLH family protein
Zpz_sc00609.1.g00230.1.sm.mkhcbHLH family protein
Zpz_sc00621.1.g00100.1.am.mkbHLH family protein
Zpz_sc00621.1.g00180.1.sm.mkhcbHLH family protein
Zpz_sc00627.1.g00150.1.am.mkbHLH family protein
Zpz_sc00636.1.g00160.1.sm.mkhcbHLH family protein
Zpz_sc00653.1.g00220.1.sm.mkhcbHLH family protein
Zpz_sc00775.1.g00200.1.sm.mkhcbHLH family protein
Zpz_sc00778.1.g00110.1.sm.mkbHLH family protein
Zpz_sc00801.1.g00070.1.am.mkbHLH family protein
Zpz_sc00804.1.g00340.1.sm.mkbHLH family protein
Zpz_sc00809.1.g00030.1.sm.mkbHLH family protein
Zpz_sc00818.1.g00080.1.sm.mkbHLH family protein
Zpz_sc00830.1.g00080.1.sm.mkhcbHLH family protein
Zpz_sc00831.1.g00070.1.am.mkbHLH family protein
Zpz_sc00835.1.g00110.1.am.mkbHLH family protein
Zpz_sc00840.1.g00090.1.am.mkbHLH family protein
Zpz_sc00845.1.g00120.1.am.mkbHLH family protein
Zpz_sc00847.1.g00100.1.sm.mkbHLH family protein
Zpz_sc00855.1.g00030.1.sm.mkhcbHLH family protein
Zpz_sc00856.1.g00020.1.am.mkhcbHLH family protein
Zpz_sc00865.1.g00080.1.sm.mkhcbHLH family protein
Zpz_sc00866.1.g00060.1.sm.mkhcbHLH family protein
Zpz_sc00876.1.g00010.1.am.mkbHLH family protein
Zpz_sc00876.1.g00180.1.am.mkbHLH family protein
Zpz_sc00876.1.g00200.1.am.mkbHLH family protein
Zpz_sc00876.1.g00210.1.am.mkbHLH family protein
Zpz_sc00934.1.g00230.1.sm.mkbHLH family protein
Zpz_sc00964.1.g00150.1.am.mkbHLH family protein
Zpz_sc00965.1.g00170.1.sm.mkhcbHLH family protein
Zpz_sc00981.1.g00030.1.sm.mkhcbHLH family protein
Zpz_sc00991.1.g00020.1.am.mkbHLH family protein
Zpz_sc00999.1.g00170.1.am.mkhcbHLH family protein
Zpz_sc01008.1.g00020.1.am.mkbHLH family protein
Zpz_sc01020.1.g00020.1.sm.mkbHLH family protein
Zpz_sc01022.1.g00170.1.sm.mkhcbHLH family protein
Zpz_sc01023.1.g00100.1.sm.mkhcbHLH family protein
Zpz_sc01042.1.g00250.1.am.mkbHLH family protein
Zpz_sc01076.1.g00050.1.sm.mkhcbHLH family protein
Zpz_sc01076.1.g00060.1.sm.mkbHLH family protein
Zpz_sc01076.1.g00070.1.am.mkbHLH family protein
Zpz_sc01076.1.g00080.1.sm.mkbHLH family protein
Zpz_sc01076.1.g00090.1.sm.mkbHLH family protein
Zpz_sc01093.1.g00070.1.am.mkbHLH family protein
Zpz_sc01112.1.g00160.1.sm.mkhcbHLH family protein
Zpz_sc01120.1.g00050.1.sm.mkhcbHLH family protein
Zpz_sc01141.1.g00140.1.am.mkbHLH family protein
Zpz_sc01141.1.g00150.1.am.mkbHLH family protein
Zpz_sc01145.1.g00140.1.am.mkbHLH family protein
Zpz_sc01182.1.g00120.1.am.mkbHLH family protein
Zpz_sc01185.1.g00060.1.sm.mkhcbHLH family protein
Zpz_sc01213.1.g00140.1.am.mkbHLH family protein
Zpz_sc01248.1.g00250.1.sm.mkbHLH family protein
Zpz_sc01260.1.g00090.1.sm.mkbHLH family protein
Zpz_sc01263.1.g00030.1.am.mkbHLH family protein
Zpz_sc01280.1.g00170.1.am.mkbHLH family protein
Zpz_sc01287.1.g00180.1.am.mkbHLH family protein
Zpz_sc01292.1.g00110.1.sm.mkhcbHLH family protein
Zpz_sc01292.1.g00190.1.am.mkbHLH family protein
Zpz_sc01318.1.g00080.1.sm.mkbHLH family protein
Zpz_sc01351.1.g00040.1.sm.mkbHLH family protein
Zpz_sc01351.1.g00050.1.sm.mkbHLH family protein
Zpz_sc01352.1.g00230.1.am.mkbHLH family protein
Zpz_sc01432.1.g00070.1.am.mkbHLH family protein
Zpz_sc01433.1.g00120.1.am.mkbHLH family protein
Zpz_sc01466.1.g00120.1.sm.mkbHLH family protein
Zpz_sc01482.1.g00130.1.am.mkhcbHLH family protein
Zpz_sc01483.1.g00070.1.am.mkbHLH family protein
Zpz_sc01484.1.g00020.1.am.mkhcbHLH family protein
Zpz_sc01496.1.g00100.1.sm.mkbHLH family protein
Zpz_sc01508.1.g00020.1.es.mkhcbHLH family protein
Zpz_sc01511.1.g00060.1.sm.mkhcbHLH family protein
Zpz_sc01530.1.g00040.1.sm.mkhcbHLH family protein
Zpz_sc01551.1.g00150.1.am.mkbHLH family protein
Zpz_sc01555.1.g00050.1.sm.mkhcbHLH family protein
Zpz_sc01557.1.g00020.1.sm.mkbHLH family protein
Zpz_sc01557.1.g00030.1.sm.mkbHLH family protein
Zpz_sc01581.1.g00100.1.am.mkhcbHLH family protein
Zpz_sc01608.1.g00130.1.sm.mkhcbHLH family protein
Zpz_sc01608.1.g00220.1.am.mkbHLH family protein
Zpz_sc01624.1.g00010.1.am.mkhcbHLH family protein
Zpz_sc01643.1.g00010.1.am.mkbHLH family protein
Zpz_sc01654.1.g00020.1.sm.mkbHLH family protein
Zpz_sc01659.1.g00040.1.am.mkbHLH family protein
Zpz_sc01668.1.g00020.1.sm.mkhcbHLH family protein
Zpz_sc01670.1.g00090.1.am.mkbHLH family protein
Zpz_sc01727.1.g00120.1.am.mkbHLH family protein
Zpz_sc01737.1.g00090.1.sm.mkhcbHLH family protein
Zpz_sc01740.1.g00060.1.am.mkbHLH family protein
Zpz_sc01747.1.g00010.1.am.mkbHLH family protein
Zpz_sc01747.1.g00020.1.am.mkbHLH family protein
Zpz_sc01779.1.g00140.1.sm.mkhcbHLH family protein
Zpz_sc01822.1.g00090.1.sm.mkbHLH family protein
Zpz_sc01827.1.g00080.1.am.mkhcbHLH family protein
Zpz_sc01828.1.g00140.1.am.mkbHLH family protein
Zpz_sc01896.1.g00060.1.sm.mkhcbHLH family protein
Zpz_sc01926.1.g00010.1.am.mkbHLH family protein
Zpz_sc01944.1.g00040.1.sm.mkbHLH family protein
Zpz_sc01974.1.g00080.1.sm.mkhcbHLH family protein
Zpz_sc01978.1.g00040.1.sm.mkhcbHLH family protein
Zpz_sc02041.1.g00130.1.sm.mkbHLH family protein
Zpz_sc02080.1.g00120.1.am.mkbHLH family protein
Zpz_sc02189.1.g00060.1.sm.mkhcbHLH family protein
Zpz_sc02202.1.g00070.1.am.mkbHLH family protein
Zpz_sc02229.1.g00130.1.sm.mkhcbHLH family protein
Zpz_sc02256.1.g00130.1.sm.mkbHLH family protein
Zpz_sc02277.1.g00050.1.sm.mkhcbHLH family protein
Zpz_sc02366.1.g00080.1.sm.mkbHLH family protein
Zpz_sc02370.1.g00130.1.am.mkbHLH family protein
Zpz_sc02372.1.g00140.1.am.mkbHLH family protein
Zpz_sc02395.1.g00050.1.sm.mkbHLH family protein
Zpz_sc02398.1.g00040.1.am.mkbHLH family protein
Zpz_sc02446.1.g00150.1.am.mkbHLH family protein
Zpz_sc02454.1.g00050.1.am.mkbHLH family protein
Zpz_sc02539.1.g00100.1.am.mkbHLH family protein
Zpz_sc02539.1.g00110.1.am.mkbHLH family protein
Zpz_sc02548.1.g00060.1.am.mkbHLH family protein
Zpz_sc02572.1.g00050.1.sm.mkhcbHLH family protein
Zpz_sc02576.1.g00140.1.am.mkbHLH family protein
Zpz_sc02642.1.g00020.1.sm.mkbHLH family protein
Zpz_sc02650.1.g00010.1.am.mkbHLH family protein
Zpz_sc02725.1.g00050.1.sm.mkbHLH family protein
Zpz_sc02787.1.g00010.1.sm.mkhcbHLH family protein
Zpz_sc02788.1.g00070.1.am.mkbHLH family protein
Zpz_sc02809.1.g00060.1.sm.mkbHLH family protein
Zpz_sc02884.1.g00010.1.am.mkbHLH family protein
Zpz_sc02892.1.g00060.1.sm.mkbHLH family protein
Zpz_sc02964.1.g00050.1.sm.mkhcbHLH family protein
Zpz_sc03046.1.g00050.1.sm.mkhcbHLH family protein
Zpz_sc03060.1.g00090.1.am.mkbHLH family protein
Zpz_sc03112.1.g00030.1.sm.mkbHLH family protein
Zpz_sc03120.1.g00040.1.am.mkbHLH family protein
Zpz_sc03130.1.g00080.1.am.mkbHLH family protein
Zpz_sc03152.1.g00010.1.am.mkbHLH family protein
Zpz_sc03192.1.g00040.1.am.mkbHLH family protein
Zpz_sc03253.1.g00010.1.sm.mkhcbHLH family protein
Zpz_sc03306.1.g00020.1.sm.mkbHLH family protein
Zpz_sc03306.1.g00080.1.sm.mkbHLH family protein
Zpz_sc03327.1.g00030.1.es.mkhcbHLH family protein
Zpz_sc03665.1.g00020.1.am.mkbHLH family protein
Zpz_sc03731.1.g00020.1.am.mkbHLH family protein
Zpz_sc03807.1.g00060.1.am.mkbHLH family protein
Zpz_sc03809.1.g00040.1.sm.mkhcbHLH family protein
Zpz_sc03844.1.g00010.1.am.mkbHLH family protein
Zpz_sc03988.1.g00040.1.sm.mkbHLH family protein
Zpz_sc04010.1.g00050.1.am.mkbHLH family protein
Zpz_sc04016.1.g00030.1.sm.mkhcbHLH family protein
Zpz_sc04026.1.g00050.1.sm.mkhcbHLH family protein
Zpz_sc04044.1.g00010.1.am.mkbHLH family protein
Zpz_sc04050.1.g00030.1.am.mkbHLH family protein
Zpz_sc04146.1.g00040.1.sm.mkhcbHLH family protein
Zpz_sc04244.1.g00040.1.am.mkbHLH family protein
Zpz_sc04250.1.g00020.1.am.mkbHLH family protein
Zpz_sc04639.1.g00030.1.am.mkbHLH family protein
Zpz_sc04833.1.g00010.1.am.mkbHLH family protein
Zpz_sc04841.1.g00020.1.am.mkhcbHLH family protein
Zpz_sc05052.1.g00020.1.am.mkbHLH family protein
Zpz_sc05191.1.g00020.1.am.mkbHLH family protein
Zpz_sc05207.1.g00010.1.am.mkbHLH family protein
Zpz_sc06462.1.g00010.1.sm.mkbHLH family protein
Zpz_sc08676.1.g00010.1.am.mkbHLH family protein
Zpz_sc10855.1.g00010.1.sm.mkbHLH family protein
Zpz_sc11335.1.g00010.1.am.mkbHLH family protein
bHLH Family Introduction

The basic/helix-loop-helix (bHLH) proteins are a superfamily of transcription factors that have been well characterized in nonplant eukaryotes, especially in mammalian systems, in which considerable structural, functional, and phylogenetic analyses have been performed. The data indicate that bHLH proteins are important regulatory components in transcriptional networks in these systems, controlling a diversity of processes from cell proliferation to cell lineage establishment.

This family is defined by the bHLH signature domain, which consists of 60 amino acids with two functionally distinct regions. The basic region, located at the N-terminal end of the domain, is involved in DNA binding and consists of 15 amino acids with a high number of basic residues. The HLH region, at the C-terminal end, functions as a dimerization domain and is constituted mainly of hydrophobic residues that form two amphipathic -helices separated by a loop region of variable sequence and length. Outside of the conserved bHLH domain, these proteins exhibit considerable sequence divergence. Cocrystal structural analysis has shown that the interaction between the HLH regions of two separate polypeptides leads to the formation of homodimers and/or heterodimers and that the basic region of each partner binds to half of the DNA recognition sequence. Some bHLH proteins form homodimers or restrict their heterodimerization activity to closely related members of the family. On the other hand, some can form heterodimers with one or several different partners.

The core DNA sequence motif recognized by the bHLH proteins is a consensus hexanucleotide sequence known as the E-box (5'-CANNTG-3'). There are different types of E-boxes, depending on the identity of the two central bases. One of the most common is the palindromic G-box (5'-CACGTG-3'). Certain conserved amino acids within the basic region of the protein provide recognition of the core consensus site, whereas other residues in the domain dictate specificity for a given type of E-box . In addition, flanking nucleotides outside of the hexanucleotide core have been shown to play a role in binding specificity, and there is evidence that a loop residue in the protein plays a role in DNA binding through elements that lie outside of the core recognition sequence.

Toledo-Ortiz G, Huq E, Quail PH.
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell. 2003 Aug;15(8):1749-70
PMID: 12897250