PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Zoysia japonica
bHLH Family
Species TF ID Description
Zjn_sc00001.1.g03000.1.sm.mkhcbHLH family protein
Zjn_sc00002.1.g00090.1.sm.mkhcbHLH family protein
Zjn_sc00002.1.g11000.1.sm.mkhcbHLH family protein
Zjn_sc00002.1.g12190.1.am.mkbHLH family protein
Zjn_sc00002.1.g13080.1.am.mkhcbHLH family protein
Zjn_sc00002.1.g13130.1.am.mkhcbHLH family protein
Zjn_sc00002.1.g15320.1.am.mkhcbHLH family protein
Zjn_sc00002.1.g15750.1.sm.mkbHLH family protein
Zjn_sc00002.1.g16440.1.sm.mkbHLH family protein
Zjn_sc00003.1.g05940.1.sm.mkhcbHLH family protein
Zjn_sc00003.1.g07320.1.am.mkbHLH family protein
Zjn_sc00003.1.g07490.1.sm.mkbHLH family protein
Zjn_sc00003.1.g09970.1.am.mkbHLH family protein
Zjn_sc00003.1.g10980.1.sm.mkbHLH family protein
Zjn_sc00003.1.g11030.1.sm.mkbHLH family protein
Zjn_sc00003.1.g13630.1.am.mkbHLH family protein
Zjn_sc00003.1.g14420.1.am.mkbHLH family protein
Zjn_sc00004.1.g01390.1.am.mkhcbHLH family protein
Zjn_sc00004.1.g01770.1.am.mkbHLH family protein
Zjn_sc00004.1.g02820.1.sm.mkhcbHLH family protein
Zjn_sc00004.1.g03090.1.sm.mkhcbHLH family protein
Zjn_sc00004.1.g08720.1.am.mkbHLH family protein
Zjn_sc00004.1.g10200.1.sm.mkbHLH family protein
Zjn_sc00004.1.g10900.1.sm.mkhcbHLH family protein
Zjn_sc00004.1.g11460.1.sm.mkbHLH family protein
Zjn_sc00005.1.g02740.1.sm.mkbHLH family protein
Zjn_sc00005.1.g03000.1.sm.mkhcbHLH family protein
Zjn_sc00005.1.g03230.1.am.mkbHLH family protein
Zjn_sc00005.1.g05330.1.am.mkbHLH family protein
Zjn_sc00005.1.g07820.1.sm.mkbHLH family protein
Zjn_sc00005.1.g08060.1.sm.mkhcbHLH family protein
Zjn_sc00005.1.g08080.1.am.mkbHLH family protein
Zjn_sc00006.1.g00210.1.sm.mkhcbHLH family protein
Zjn_sc00006.1.g03280.1.sm.mkbHLH family protein
Zjn_sc00006.1.g05510.1.am.mkbHLH family protein
Zjn_sc00006.1.g05990.1.am.mkbHLH family protein
Zjn_sc00006.1.g07170.1.sm.mkhcbHLH family protein
Zjn_sc00006.1.g07210.1.sm.mkbHLH family protein
Zjn_sc00007.1.g01670.1.am.mkbHLH family protein
Zjn_sc00007.1.g02050.1.am.mkbHLH family protein
Zjn_sc00007.1.g04730.1.sm.mkbHLH family protein
Zjn_sc00007.1.g06180.1.am.mkbHLH family protein
Zjn_sc00007.1.g07110.1.am.mkbHLH family protein
Zjn_sc00007.1.g07490.1.sm.mkbHLH family protein
Zjn_sc00007.1.g07890.1.am.mkhcbHLH family protein
Zjn_sc00007.1.g08350.1.am.mkbHLH family protein
Zjn_sc00008.1.g00460.1.am.mkbHLH family protein
Zjn_sc00008.1.g05290.1.am.mkbHLH family protein
Zjn_sc00008.1.g06800.1.am.mkbHLH family protein
Zjn_sc00008.1.g08260.1.sm.mkbHLH family protein
Zjn_sc00008.1.g08830.1.sm.mkhcbHLH family protein
Zjn_sc00008.1.g09440.1.sm.mkbHLH family protein
Zjn_sc00008.1.g11840.1.am.mkbHLH family protein
Zjn_sc00008.1.g12060.1.sm.mkhcbHLH family protein
Zjn_sc00009.1.g00860.1.sm.mkhcbHLH family protein
Zjn_sc00009.1.g01880.1.sm.mkbHLH family protein
Zjn_sc00009.1.g02960.1.sm.mkhcbHLH family protein
Zjn_sc00009.1.g03640.1.sm.mkhcbHLH family protein
Zjn_sc00009.1.g07690.1.sm.mkbHLH family protein
Zjn_sc00010.1.g00500.1.sm.mkbHLH family protein
Zjn_sc00011.1.g01200.1.sm.mkbHLH family protein
Zjn_sc00011.1.g01280.1.am.mkbHLH family protein
Zjn_sc00011.1.g04920.1.am.mkbHLH family protein
Zjn_sc00011.1.g07570.1.sm.mkbHLH family protein
Zjn_sc00011.1.g08140.1.am.mkbHLH family protein
Zjn_sc00012.1.g00550.1.sm.mkbHLH family protein
Zjn_sc00013.1.g00010.1.am.mkbHLH family protein
Zjn_sc00013.1.g00030.1.am.mkbHLH family protein
Zjn_sc00013.1.g02860.1.sm.mkhcbHLH family protein
Zjn_sc00013.1.g03140.1.am.mkhcbHLH family protein
Zjn_sc00013.1.g03870.1.am.mkbHLH family protein
Zjn_sc00013.1.g04870.1.sm.mkhcbHLH family protein
Zjn_sc00013.1.g06170.1.am.mkhcbHLH family protein
Zjn_sc00013.1.g07150.1.sm.mkhcbHLH family protein
Zjn_sc00013.1.g08050.1.am.mkbHLH family protein
Zjn_sc00014.1.g02570.1.sm.mkhcbHLH family protein
Zjn_sc00014.1.g02900.1.am.mkhcbHLH family protein
Zjn_sc00014.1.g05320.1.sm.mkbHLH family protein
Zjn_sc00014.1.g06480.1.am.mkhcbHLH family protein
Zjn_sc00014.1.g07310.1.sm.mkhcbHLH family protein
Zjn_sc00015.1.g01540.1.am.mkbHLH family protein
Zjn_sc00015.1.g03370.1.am.mkbHLH family protein
Zjn_sc00015.1.g04040.1.sm.mkbHLH family protein
Zjn_sc00015.1.g04470.1.am.mkbHLH family protein
Zjn_sc00015.1.g04530.1.sm.mkhcbHLH family protein
Zjn_sc00015.1.g05320.1.sm.mkhcbHLH family protein
Zjn_sc00015.1.g06230.1.sm.mkbHLH family protein
Zjn_sc00015.1.g06810.1.am.mkhcbHLH family protein
Zjn_sc00015.1.g07150.1.am.mkbHLH family protein
Zjn_sc00016.1.g03930.1.am.mkbHLH family protein
Zjn_sc00016.1.g04730.1.am.mkbHLH family protein
Zjn_sc00017.1.g01350.1.sm.mkhcbHLH family protein
Zjn_sc00017.1.g03630.1.am.mkbHLH family protein
Zjn_sc00017.1.g06120.1.sm.mkhcbHLH family protein
Zjn_sc00018.1.g01220.1.sm.mkhcbHLH family protein
Zjn_sc00018.1.g01910.1.am.mkbHLH family protein
Zjn_sc00018.1.g02690.1.sm.mkhcbHLH family protein
Zjn_sc00018.1.g02760.1.am.mkbHLH family protein
Zjn_sc00018.1.g02990.1.sm.mkbHLH family protein
Zjn_sc00018.1.g03210.1.am.mkbHLH family protein
Zjn_sc00018.1.g03730.1.am.mkbHLH family protein
Zjn_sc00018.1.g06960.1.am.mkbHLH family protein
Zjn_sc00019.1.g02800.1.sm.mkhcbHLH family protein
Zjn_sc00019.1.g04580.1.am.mkbHLH family protein
Zjn_sc00020.1.g01300.1.sm.mkbHLH family protein
Zjn_sc00020.1.g01310.1.am.mkbHLH family protein
Zjn_sc00020.1.g03690.1.sm.mkhcbHLH family protein
Zjn_sc00021.1.g01380.1.sm.mkbHLH family protein
Zjn_sc00021.1.g01720.1.am.mkhcbHLH family protein
Zjn_sc00022.1.g00530.1.sm.mkhcbHLH family protein
Zjn_sc00022.1.g01290.1.am.mkbHLH family protein
Zjn_sc00022.1.g03530.1.sm.mkbHLH family protein
Zjn_sc00022.1.g03930.1.sm.mkbHLH family protein
Zjn_sc00022.1.g04320.1.sm.mkhcbHLH family protein
Zjn_sc00022.1.g04840.1.sm.mkbHLH family protein
Zjn_sc00023.1.g03380.1.am.mkbHLH family protein
Zjn_sc00023.1.g03960.1.am.mkhcbHLH family protein
Zjn_sc00023.1.g04320.1.sm.mkbHLH family protein
Zjn_sc00024.1.g01570.1.am.mkbHLH family protein
Zjn_sc00025.1.g00090.1.sm.mkhcbHLH family protein
Zjn_sc00025.1.g03880.1.sm.mkhcbHLH family protein
Zjn_sc00027.1.g00440.1.sm.mkbHLH family protein
Zjn_sc00029.1.g03690.1.sm.mkbHLH family protein
Zjn_sc00029.1.g03780.1.sm.mkbHLH family protein
Zjn_sc00029.1.g06060.1.sm.mkbHLH family protein
Zjn_sc00030.1.g01160.1.am.mkbHLH family protein
Zjn_sc00030.1.g02430.1.sm.mkhcbHLH family protein
Zjn_sc00030.1.g02470.1.sm.mkbHLH family protein
Zjn_sc00032.1.g00520.1.am.mkbHLH family protein
Zjn_sc00034.1.g01110.1.am.mkhcbHLH family protein
Zjn_sc00034.1.g01120.1.sm.mkbHLH family protein
Zjn_sc00034.1.g02330.1.am.mkhcbHLH family protein
Zjn_sc00034.1.g03390.1.sm.mkhcbHLH family protein
Zjn_sc00034.1.g04140.1.am.mkhcbHLH family protein
Zjn_sc00036.1.g03930.1.am.mkbHLH family protein
Zjn_sc00037.1.g02190.1.sm.mkhcbHLH family protein
Zjn_sc00038.1.g00820.1.am.mkbHLH family protein
Zjn_sc00038.1.g03350.1.sm.mkbHLH family protein
Zjn_sc00039.1.g00280.1.am.mkhcbHLH family protein
Zjn_sc00039.1.g00340.1.am.mkbHLH family protein
Zjn_sc00039.1.g00610.1.am.mkbHLH family protein
Zjn_sc00039.1.g00870.1.am.mkbHLH family protein
Zjn_sc00039.1.g01250.1.am.mkbHLH family protein
Zjn_sc00039.1.g03120.1.sm.mkhcbHLH family protein
Zjn_sc00039.1.g03650.1.am.mkbHLH family protein
Zjn_sc00040.1.g01320.1.sm.mkhcbHLH family protein
Zjn_sc00040.1.g01400.1.sm.mkhcbHLH family protein
Zjn_sc00040.1.g04250.1.sm.mkbHLH family protein
Zjn_sc00043.1.g00700.1.am.mkbHLH family protein
Zjn_sc00043.1.g00860.1.am.mkbHLH family protein
Zjn_sc00043.1.g00880.1.am.mkbHLH family protein
Zjn_sc00043.1.g00900.1.am.mkbHLH family protein
Zjn_sc00043.1.g04040.1.am.mkbHLH family protein
Zjn_sc00043.1.g04860.1.am.mkhcbHLH family protein
Zjn_sc00044.1.g00550.1.sm.mkbHLH family protein
Zjn_sc00045.1.g00320.1.am.mkbHLH family protein
Zjn_sc00047.1.g01530.1.am.mkbHLH family protein
Zjn_sc00047.1.g02810.1.sm.mkhcbHLH family protein
Zjn_sc00049.1.g02790.1.sm.mkhcbHLH family protein
Zjn_sc00049.1.g04360.1.am.mkbHLH family protein
Zjn_sc00050.1.g02030.1.am.mkbHLH family protein
Zjn_sc00050.1.g02270.1.sm.mkhcbHLH family protein
Zjn_sc00051.1.g01040.1.sm.mkbHLH family protein
Zjn_sc00051.1.g02410.1.am.mkbHLH family protein
Zjn_sc00053.1.g02030.1.am.mkbHLH family protein
Zjn_sc00058.1.g02750.1.sm.mkbHLH family protein
Zjn_sc00059.1.g01300.1.sm.mkbHLH family protein
Zjn_sc00061.1.g01420.1.am.mkbHLH family protein
Zjn_sc00063.1.g00830.1.am.mkbHLH family protein
Zjn_sc00063.1.g02580.1.am.mkhcbHLH family protein
Zjn_sc00064.1.g00260.1.es.mkhcbHLH family protein
Zjn_sc00064.1.g01090.1.am.mkbHLH family protein
Zjn_sc00065.1.g01610.1.am.mkbHLH family protein
Zjn_sc00066.1.g01470.1.sm.mkbHLH family protein
Zjn_sc00066.1.g02080.1.sm.mkbHLH family protein
Zjn_sc00068.1.g03390.1.sm.mkbHLH family protein
Zjn_sc00069.1.g01610.1.am.mkbHLH family protein
Zjn_sc00071.1.g00350.1.am.mkbHLH family protein
Zjn_sc00078.1.g00160.1.sm.mkhcbHLH family protein
Zjn_sc00078.1.g01160.1.am.mkbHLH family protein
Zjn_sc00078.1.g02350.1.am.mkbHLH family protein
Zjn_sc00080.1.g00670.1.sm.mkhcbHLH family protein
Zjn_sc00087.1.g00860.1.am.mkbHLH family protein
Zjn_sc00087.1.g00870.1.am.mkbHLH family protein
Zjn_sc00088.1.g00480.1.sm.mkbHLH family protein
Zjn_sc00088.1.g01560.1.am.mkbHLH family protein
Zjn_sc00088.1.g02100.1.am.mkbHLH family protein
Zjn_sc00090.1.g01050.1.am.mkhcbHLH family protein
Zjn_sc00090.1.g01060.1.am.mkbHLH family protein
Zjn_sc00091.1.g01380.1.am.mkbHLH family protein
Zjn_sc00094.1.g00080.1.am.mkbHLH family protein
Zjn_sc00100.1.g00500.1.am.mkbHLH family protein
Zjn_sc00102.1.g00170.1.sm.mkhcbHLH family protein
Zjn_sc00104.1.g00180.1.sm.mkbHLH family protein
Zjn_sc00105.1.g00380.1.sm.mkhcbHLH family protein
Zjn_sc00106.1.g00350.1.sm.mkhcbHLH family protein
Zjn_sc00106.1.g00430.1.am.mkbHLH family protein
Zjn_sc00106.1.g00790.1.am.mkbHLH family protein
Zjn_sc00106.1.g01000.1.sm.mkbHLH family protein
Zjn_sc00106.1.g01330.1.sm.mkbHLH family protein
Zjn_sc00107.1.g00070.1.am.mkbHLH family protein
Zjn_sc00107.1.g00520.1.am.mkbHLH family protein
Zjn_sc00113.1.g00240.1.sm.mkbHLH family protein
Zjn_sc00138.1.g00340.1.am.mkbHLH family protein
Zjn_sc00143.1.g00730.1.am.mkhcbHLH family protein
Zjn_sc00148.1.g00240.1.am.mkbHLH family protein
Zjn_sc00150.1.g00480.1.am.mkbHLH family protein
Zjn_sc00152.1.g00670.1.sm.mkbHLH family protein
Zjn_sc00155.1.g00650.1.sm.mkhcbHLH family protein
Zjn_sc00155.1.g00780.1.sm.mkbHLH family protein
Zjn_sc00156.1.g00380.1.am.mkbHLH family protein
Zjn_sc00171.1.g00170.1.am.mkbHLH family protein
Zjn_sc00205.1.g00060.1.sm.mkhcbHLH family protein
Zjn_sc00233.1.g00120.1.am.mkbHLH family protein
Zjn_sc00669.1.g00010.1.sm.mkbHLH family protein
Zjn_sc01994.1.g00010.1.am.mkbHLH family protein
bHLH Family Introduction

The basic/helix-loop-helix (bHLH) proteins are a superfamily of transcription factors that have been well characterized in nonplant eukaryotes, especially in mammalian systems, in which considerable structural, functional, and phylogenetic analyses have been performed. The data indicate that bHLH proteins are important regulatory components in transcriptional networks in these systems, controlling a diversity of processes from cell proliferation to cell lineage establishment.

This family is defined by the bHLH signature domain, which consists of 60 amino acids with two functionally distinct regions. The basic region, located at the N-terminal end of the domain, is involved in DNA binding and consists of 15 amino acids with a high number of basic residues. The HLH region, at the C-terminal end, functions as a dimerization domain and is constituted mainly of hydrophobic residues that form two amphipathic -helices separated by a loop region of variable sequence and length. Outside of the conserved bHLH domain, these proteins exhibit considerable sequence divergence. Cocrystal structural analysis has shown that the interaction between the HLH regions of two separate polypeptides leads to the formation of homodimers and/or heterodimers and that the basic region of each partner binds to half of the DNA recognition sequence. Some bHLH proteins form homodimers or restrict their heterodimerization activity to closely related members of the family. On the other hand, some can form heterodimers with one or several different partners.

The core DNA sequence motif recognized by the bHLH proteins is a consensus hexanucleotide sequence known as the E-box (5'-CANNTG-3'). There are different types of E-boxes, depending on the identity of the two central bases. One of the most common is the palindromic G-box (5'-CACGTG-3'). Certain conserved amino acids within the basic region of the protein provide recognition of the core consensus site, whereas other residues in the domain dictate specificity for a given type of E-box . In addition, flanking nucleotides outside of the hexanucleotide core have been shown to play a role in binding specificity, and there is evidence that a loop residue in the protein plays a role in DNA binding through elements that lie outside of the core recognition sequence.

Toledo-Ortiz G, Huq E, Quail PH.
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell. 2003 Aug;15(8):1749-70
PMID: 12897250