PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Triticum aestivum
FAR1 Family
Species TF ID Description
Traes_1AL_1751C4BBF.2FAR1 family protein
Traes_1AL_6EE3AB1BA.1FAR1 family protein
Traes_1AL_BFDD733CB.2FAR1 family protein
Traes_1AL_DD7FB8E96.1FAR1 family protein
Traes_1AL_F8054064A.1FAR1 family protein
Traes_1AS_1751C4BBF.2FAR1 family protein
Traes_1AS_C7D489C03.1FAR1 family protein
Traes_1AS_F08B3720F.2FAR1 family protein
Traes_1BL_9BF41B805.1FAR1 family protein
Traes_1BL_A75EDBFD9.2FAR1 family protein
Traes_1BL_B4400C4B7.1FAR1 family protein
Traes_1BL_DED873B03.1FAR1 family protein
Traes_1BS_649624FE9.1FAR1 family protein
Traes_1BS_7F7F9918B.1FAR1 family protein
Traes_1BS_FBCD9C4B1.1FAR1 family protein
Traes_1DL_58BEEDC49.1FAR1 family protein
Traes_1DL_7AB06DF09.1FAR1 family protein
Traes_1DL_BE3693D27.2FAR1 family protein
Traes_1DL_C0569EACC.1FAR1 family protein
Traes_1DL_CE56482B5.1FAR1 family protein
Traes_1DL_DD0FCDF93.1FAR1 family protein
Traes_1DL_F9E8D5568.1FAR1 family protein
Traes_1DS_E5423261A.1FAR1 family protein
Traes_2AL_05ADB552E.2FAR1 family protein
Traes_2AL_163D42961.1FAR1 family protein
Traes_2AL_232DE3B52.1FAR1 family protein
Traes_2AL_9A4A7514E.1FAR1 family protein
Traes_2AL_ABBE06B44.1FAR1 family protein
Traes_2AS_12294E9D5.1FAR1 family protein
Traes_2AS_1683BEFD0.1FAR1 family protein
Traes_2AS_16D1CC46E.1FAR1 family protein
Traes_2AS_3DDBFDD8D.1FAR1 family protein
Traes_2AS_40682422C.1FAR1 family protein
Traes_2AS_40682422C1.1FAR1 family protein
Traes_2AS_5B8CF4BA2.1FAR1 family protein
Traes_2AS_70DFD1AE1.2FAR1 family protein
Traes_2AS_BB6B8AC48.2FAR1 family protein
Traes_2BL_068034A6D.1FAR1 family protein
Traes_2BL_1506D0FD2.1FAR1 family protein
Traes_2BL_1751C4BBF.2FAR1 family protein
Traes_2BL_2ECC216F7.2FAR1 family protein
Traes_2BL_84018B863.1FAR1 family protein
Traes_2BL_C1DE13045.1FAR1 family protein
Traes_2BL_D4386368B.2FAR1 family protein
Traes_2BL_E5C380F21.1FAR1 family protein
Traes_2BS_1751C4BBF.2FAR1 family protein
Traes_2BS_3CA0FC03E.1FAR1 family protein
Traes_2BS_59D534318.1FAR1 family protein
Traes_2BS_62B9BD157.1FAR1 family protein
Traes_2BS_C9299F976.2FAR1 family protein
Traes_2DL_01DEC201E.2FAR1 family protein
Traes_2DL_10A3AF467.1FAR1 family protein
Traes_2DL_23445B251.2FAR1 family protein
Traes_2DL_617DB5FC6.1FAR1 family protein
Traes_2DL_6649188E4.1FAR1 family protein
Traes_2DL_7DFB74CDE.1FAR1 family protein
Traes_2DL_9071B96BD.1FAR1 family protein
Traes_2DL_F37E51175.1FAR1 family protein
Traes_2DS_637EBDDC6.1FAR1 family protein
Traes_2DS_7FB19CC37.1FAR1 family protein
Traes_2DS_82DA4DF43.1FAR1 family protein
Traes_2DS_C83B7F5CF.1FAR1 family protein
Traes_3AL_29AD9D378.2FAR1 family protein
Traes_3AL_861C1D473.1FAR1 family protein
Traes_3AS_465421436.1FAR1 family protein
Traes_3AS_9B4FF6282.1FAR1 family protein
Traes_3B_9769B2425.1FAR1 family protein
Traes_3DL_19DD13245.1FAR1 family protein
Traes_3DL_3ECFD7555.1FAR1 family protein
Traes_3DL_575C5670C.2FAR1 family protein
Traes_3DL_7B0E46392.1FAR1 family protein
Traes_3DL_80E8CBB73.1FAR1 family protein
Traes_3DS_2D5A1C423.1FAR1 family protein
Traes_3DS_AB726A97D.1FAR1 family protein
Traes_4AL_161D3D25E.2FAR1 family protein
Traes_4AL_8B3A3CC2F.2FAR1 family protein
Traes_4AL_9018B5132.1FAR1 family protein
Traes_4AL_9A089DC10.1FAR1 family protein
Traes_4AL_C5050FD87.1FAR1 family protein
Traes_4AS_124CCE880.2FAR1 family protein
Traes_4AS_200E79902.1FAR1 family protein
Traes_4AS_200E799021.1FAR1 family protein
Traes_4AS_4A418E6B5.4FAR1 family protein
Traes_4AS_551523088.1FAR1 family protein
Traes_4AS_636DF8B4C.2FAR1 family protein
Traes_4AS_6B1AEFACE.2FAR1 family protein
Traes_4AS_AA492B6A9.1FAR1 family protein
Traes_4BL_00160D0BD.1FAR1 family protein
Traes_4BL_0437CF0AD.1FAR1 family protein
Traes_4BL_0437CF0AD1.1FAR1 family protein
Traes_4BL_208AF4C7D.2FAR1 family protein
Traes_4BL_C8067812A.2FAR1 family protein
Traes_4BL_DCD5FA440.1FAR1 family protein
Traes_4BL_F0B0E6B0A.2FAR1 family protein
Traes_4BS_1751C4BBF.2FAR1 family protein
Traes_4BS_3F0358CB1.1FAR1 family protein
Traes_4DL_879C8557D.1FAR1 family protein
Traes_4DL_A9DA4DCF1.2FAR1 family protein
Traes_4DL_C77385A0D.2FAR1 family protein
Traes_4DS_01780A949.1FAR1 family protein
Traes_4DS_3C9C1DBA1.3FAR1 family protein
Traes_4DS_F05CBDEB6.1FAR1 family protein
Traes_5AL_0CAD19709.1FAR1 family protein
Traes_5AL_0DF34352F.2FAR1 family protein
Traes_5AL_10E85D5B3.1FAR1 family protein
Traes_5AL_69C653611.1FAR1 family protein
Traes_5AL_80CF1975F.1FAR1 family protein
Traes_5AL_9775A72F6.1FAR1 family protein
Traes_5AL_CA424FE08.2FAR1 family protein
Traes_5AS_068F5C18A.1FAR1 family protein
Traes_5AS_1986BD81F.2FAR1 family protein
Traes_5AS_385093B54.2FAR1 family protein
Traes_5AS_4B8974198.2FAR1 family protein
Traes_5AS_D0F590190.1FAR1 family protein
Traes_5BL_1783B924B.1FAR1 family protein
Traes_5BL_2C77A04C2.2FAR1 family protein
Traes_5BL_4D4B8A841.1FAR1 family protein
Traes_5BL_8BAA498F1.1FAR1 family protein
Traes_5BL_9EB8DE389.1FAR1 family protein
Traes_5BL_B569B5FF4.1FAR1 family protein
Traes_5BL_BC56C7E17.2FAR1 family protein
Traes_5BL_CCDB985ED.2FAR1 family protein
Traes_5BS_1751C4BBF.2FAR1 family protein
Traes_5BS_48110DBF6.1FAR1 family protein
Traes_5BS_69957E77A.2FAR1 family protein
Traes_5BS_86C1C9A9F.2FAR1 family protein
Traes_5BS_96DCE1858.1FAR1 family protein
Traes_5BS_B7F04C1A5.4FAR1 family protein
Traes_5BS_BCC406654.2FAR1 family protein
Traes_5BS_D5FD1D5CE.2FAR1 family protein
Traes_5BS_E5423261A.1FAR1 family protein
Traes_5DL_030E64B15.2FAR1 family protein
Traes_5DL_34CCC8525.1FAR1 family protein
Traes_5DL_4ABC24378.2FAR1 family protein
Traes_5DL_BCD584BC0.2FAR1 family protein
Traes_5DL_EF9AFFB3D.2FAR1 family protein
Traes_5DL_FC7D15A05.1FAR1 family protein
Traes_5DS_4C8D413E1.2FAR1 family protein
Traes_5DS_61EE28B2A.2FAR1 family protein
Traes_5DS_620A46565.1FAR1 family protein
Traes_5DS_9E038EFF9.2FAR1 family protein
Traes_5DS_E9D675FAC.1FAR1 family protein
Traes_6AL_1DC1EF368.2FAR1 family protein
Traes_6AL_5C48AC7D7.1FAR1 family protein
Traes_6AL_B082ABBFC.1FAR1 family protein
Traes_6AL_F23B20CBD.1FAR1 family protein
Traes_6AS_6D2F550E3.1FAR1 family protein
Traes_6AS_895EC9E40.1FAR1 family protein
Traes_6AS_B32FAA464.1FAR1 family protein
Traes_6BL_35444DAF9.2FAR1 family protein
Traes_6BL_3A98C155D.1FAR1 family protein
Traes_6BL_3F20B009E.1FAR1 family protein
Traes_6BL_7BF2DD21E.1FAR1 family protein
Traes_6BL_882745936.1FAR1 family protein
Traes_6BS_0A7B95279.1FAR1 family protein
Traes_6BS_1751C4BBF.2FAR1 family protein
Traes_6BS_833C847B7.1FAR1 family protein
Traes_6DL_6BFC1BFFF.2FAR1 family protein
Traes_6DL_9097A97D9.1FAR1 family protein
Traes_6DL_E5423261A.1FAR1 family protein
Traes_6DL_E5423261A1.1FAR1 family protein
Traes_6DL_E80867546.1FAR1 family protein
Traes_6DL_ED5844DD2.1FAR1 family protein
Traes_6DL_FDED400C4.1FAR1 family protein
Traes_6DS_10411A1DC.1FAR1 family protein
Traes_6DS_2BF4B191B.1FAR1 family protein
Traes_6DS_31C9B430A.1FAR1 family protein
Traes_6DS_31C9B430A1.1FAR1 family protein
Traes_6DS_432113694.1FAR1 family protein
Traes_7AL_5585F9BD1.1FAR1 family protein
Traes_7AL_635989DBF.1FAR1 family protein
Traes_7AL_8258AAE78.2FAR1 family protein
Traes_7AS_0437CF0AD.1FAR1 family protein
Traes_7AS_6EE1182D4.1FAR1 family protein
Traes_7AS_6EE1182D41.1FAR1 family protein
Traes_7AS_6EE1182D42.1FAR1 family protein
Traes_7AS_715C6A2D6.2FAR1 family protein
Traes_7AS_DE61FE07F.1FAR1 family protein
Traes_7BL_1751C4BBF.2FAR1 family protein
Traes_7BL_65B9384BF.1FAR1 family protein
Traes_7BL_8492576A6.1FAR1 family protein
Traes_7BL_8C67B476B.1FAR1 family protein
Traes_7BL_9884A6FA5.1FAR1 family protein
Traes_7BL_A201C1A091.2FAR1 family protein
Traes_7BL_A201C1A09.2FAR1 family protein
Traes_7BL_C12DC1916.1FAR1 family protein
Traes_7BL_EBACA7012.2FAR1 family protein
Traes_7BS_1B525AFF5.2FAR1 family protein
Traes_7BS_B6E41024D.2FAR1 family protein
Traes_7DL_2C70F034C.1FAR1 family protein
Traes_7DL_9D97AB442.1FAR1 family protein
Traes_7DL_B8D140CC3.1FAR1 family protein
Traes_7DL_E5423261A.1FAR1 family protein
Traes_7DL_E5423261A1.1FAR1 family protein
Traes_7DL_E5423261A2.1FAR1 family protein
Traes_7DS_016F8E2EA.1FAR1 family protein
Traes_7DS_559DD9894.1FAR1 family protein
Traes_7DS_6354FF359.1FAR1 family protein
Traes_7DS_BA2B07F73.1FAR1 family protein
Traes_7DS_E98DB84F1.1FAR1 family protein
Traes_7DS_EB10DBA07.2FAR1 family protein
FAR1 Family Introduction

We show that Arabidopsis FHY3 and FAR1, which encode two proteins related to Mutator-like transposases, act together to modulate phyA signaling by directly activating the transcription of FHY1 and FHL, whose products are essential for light-induced phyA nuclear accumulation and subsequent light responses. FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.

We next used a yeast one-hybrid assay to delineate the DNA sequences to which FHY3 and FAR1 bind. GAD-FHY3 or GAD-FAR1 fusion proteins (GAD, GAL4 transcriptional activation domain), but not GAD alone, activated the LacZ reporter genes driven by the FHY1 and FHL promoters. Deletion analysis narrowed down the FHY3/FAR1 binding site to a 39-bp promoter subfragment located on the "a" fragment for both FHY1 and FHL. Notably, these subfragments share a stretch of consensus sequence, 5'-TTCACGCGCC-3'. Mutating the core sequence "CACGCGC" of this motif (m2 and m3 for FHY1, m5 for FHL) abolished the reporter gene activation by both GAD-FHY3 and GAD-FAR1. Mutating the flanking sequences (m1 and m4) did not obviously affect the reporter gene activation by GAD-FAR1, but clearly reduced activation by GAD-FHY3. Thus, "CACGCGC" likely defines a cis-element that confers specific binding for FHY3 and FAR1 and is named FBS for FHY3-FAR1 binding site.

Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H.
Transposase-derived transcription factors regulate light signaling in Arabidopsis.
Science, 2007. 318(5854): p. 1302-5.
PMID: 18033885