PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Prunus mume
M-type_MADS Family
Species TF ID Description
XP_008219303.1M-type_MADS family protein
XP_008222757.1M-type_MADS family protein
XP_008222760.2M-type_MADS family protein
XP_008223733.1M-type_MADS family protein
XP_008224041.1M-type_MADS family protein
XP_008227067.1M-type_MADS family protein
XP_008227304.1M-type_MADS family protein
XP_008227312.1M-type_MADS family protein
XP_008227332.1M-type_MADS family protein
XP_008228223.1M-type_MADS family protein
XP_008228238.1M-type_MADS family protein
XP_008228348.1M-type_MADS family protein
XP_008228431.1M-type_MADS family protein
XP_008229316.1M-type_MADS family protein
XP_008231614.1M-type_MADS family protein
XP_008232276.2M-type_MADS family protein
XP_008232412.1M-type_MADS family protein
XP_008236215.1M-type_MADS family protein
XP_008236216.1M-type_MADS family protein
XP_008236239.1M-type_MADS family protein
XP_008236241.1M-type_MADS family protein
XP_008237336.1M-type_MADS family protein
XP_008239928.1M-type_MADS family protein
XP_008240414.1M-type_MADS family protein
XP_008240673.1M-type_MADS family protein
XP_008240681.1M-type_MADS family protein
XP_008240689.1M-type_MADS family protein
XP_008241193.1M-type_MADS family protein
XP_008241194.1M-type_MADS family protein
XP_008241195.1M-type_MADS family protein
XP_008241202.1M-type_MADS family protein
XP_008245457.1M-type_MADS family protein
XP_008246386.1M-type_MADS family protein
XP_008246387.1M-type_MADS family protein
XP_016646936.1M-type_MADS family protein
XP_016646988.1M-type_MADS family protein
XP_016648083.1M-type_MADS family protein
XP_016648084.1M-type_MADS family protein
XP_016649699.1M-type_MADS family protein
XP_016651355.1M-type_MADS family protein
XP_016652586.1M-type_MADS family protein
M-type_MADS (M-type MADS) Family Introduction

The best studied plant MADS-box transcription factors are those involved in floral organ identity determination. Analysis of homeotic floral mutants resulted in the formulation of a genetic model, named the ABC model, that explains how the combined functions of three classes of genes (A, B, and C) determine the identity of the four flower organs (reviewed by Coen and Meyerowitz, 1991). Arabidopsis has two A-class genes (AP1 and AP2 [Bowman et al., 1989]), two B-class genes (PI and AP3), and a single C-class gene (AG), of which only AP2 is not a MADS-box gene. Recently, it was shown that the Arabidopsis B- and C-function genes, which control petal, stamen, and carpel development, are functionally dependent on three highly similar MADS-box genes, SEP1, SEP2, and SEP3 (Pelaz et al., 2000). Interestingly, only when mutant knockout alleles of the three SEP genes were combined in a triple sep1 sep2 sep3 mutant was loss of petal, stamen, and carpel identity observed, resulting in a flower composed of only sepals. This example shows that redundancy occurs in the MADS-box gene family, which complicates reverse genetic strategies for gene function analysis. The SHP genes provide another example of MADS-box gene redundancy. shp1 and shp2 single mutants do not exhibit any phenotypic effect, whereas in the double mutant, development of the dehiscence zone is disturbed in the fruit, resulting in a failure to release seeds (Liljegren et al., 2000)[1].

It has been proposed that there are at least 2 lineages (type I and type II) of MADS-box genes in plants, animals, and fungi. Most of the well-studied plant genes are type II genes and have three more domains than type I genes from the N to the C terminus of the protein:intervening (I) domain (~30 codons), keratin-lik e coiled-coil (K) domain (~70 codons), and Cterminal (C) domain (variable length). These genes are called the MIKC-type and are specific to plants[2].

The MADS-box is a DNA binding domain of 58 amino acids that binds DNA at consensus recognition sequences known as CArG boxes [CC(A/T)6GG] (Hayes et al., 1988; Riechmann et al., 1996b). The interaction with DNA has been studied in detail for the human and yeast MADS-box proteins thanks to the resolved crystal structures (Pellegrini et al., 1995; Santelli and Richmond, 2000). The I domain is less conserved and contributes to the specification of dimerization. The K domain is characterized by a coiled-coil structure, which facilitates the dimerization of MADS-box proteins (Davies et al., 1996; Fan et al., 1997). The C domain is the least conserved domain; in some cases, it has been shown to contain a transactivation domain or to contribute to the formation of multimeric MADS-box protein complexes (Egea-Cortines et al., 1999; Honma and Goto, 2001)[1].

1.Parenicova L, de Folter S, Kieffer M, Horner DS, Favalli C, Busscher J, Cook HE, Ingram RM, Kater MM, Davies B, Angenent GC, Colombo L.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell. 2003 Jul;15(7):1538-51.
PMID: 12837945
2.Nam J, dePamphilis CW, Ma H, Nei M.
Antiquity and evolution of the MADS-box gene family controlling flower development in plants.
Mol Biol Evol. 2003 Sep;20(9):1435-47. Epub 2003 May 30.
PMID: 12777513