PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Oryza punctata
M-type_MADS Family
Species TF ID Description
OPUNC01G06920.1M-type_MADS family protein
OPUNC01G11720.1M-type_MADS family protein
OPUNC01G11730.1M-type_MADS family protein
OPUNC01G13860.1M-type_MADS family protein
OPUNC01G13870.1M-type_MADS family protein
OPUNC01G39870.1M-type_MADS family protein
OPUNC01G40380.1M-type_MADS family protein
OPUNC01G41110.1M-type_MADS family protein
OPUNC01G44670.1M-type_MADS family protein
OPUNC02G04080.1M-type_MADS family protein
OPUNC03G10480.1M-type_MADS family protein
OPUNC03G22520.1M-type_MADS family protein
OPUNC04G08530.1M-type_MADS family protein
OPUNC04G08530.2M-type_MADS family protein
OPUNC04G10030.1M-type_MADS family protein
OPUNC04G12890.5M-type_MADS family protein
OPUNC05G08960.1M-type_MADS family protein
OPUNC06G00450.1M-type_MADS family protein
OPUNC06G00450.2M-type_MADS family protein
OPUNC06G07570.1M-type_MADS family protein
OPUNC06G12720.1M-type_MADS family protein
OPUNC06G14680.1M-type_MADS family protein
OPUNC06G14730.1M-type_MADS family protein
OPUNC06G14740.1M-type_MADS family protein
OPUNC07G02060.1M-type_MADS family protein
OPUNC08G12800.1M-type_MADS family protein
OPUNC08G17110.1M-type_MADS family protein
OPUNC08G17110.2M-type_MADS family protein
OPUNC08G17110.3M-type_MADS family protein
OPUNC08G17110.4M-type_MADS family protein
OPUNC08G17930.1M-type_MADS family protein
OPUNC08G18260.1M-type_MADS family protein
OPUNC09G00580.1M-type_MADS family protein
OPUNC09G08220.1M-type_MADS family protein
OPUNC11G07320.1M-type_MADS family protein
OPUNC11G18320.1M-type_MADS family protein
OPUNC11G18320.2M-type_MADS family protein
OPUNC12G08600.1M-type_MADS family protein
OPUNC12G08610.1M-type_MADS family protein
M-type_MADS (M-type MADS) Family Introduction

The best studied plant MADS-box transcription factors are those involved in floral organ identity determination. Analysis of homeotic floral mutants resulted in the formulation of a genetic model, named the ABC model, that explains how the combined functions of three classes of genes (A, B, and C) determine the identity of the four flower organs (reviewed by Coen and Meyerowitz, 1991). Arabidopsis has two A-class genes (AP1 and AP2 [Bowman et al., 1989]), two B-class genes (PI and AP3), and a single C-class gene (AG), of which only AP2 is not a MADS-box gene. Recently, it was shown that the Arabidopsis B- and C-function genes, which control petal, stamen, and carpel development, are functionally dependent on three highly similar MADS-box genes, SEP1, SEP2, and SEP3 (Pelaz et al., 2000). Interestingly, only when mutant knockout alleles of the three SEP genes were combined in a triple sep1 sep2 sep3 mutant was loss of petal, stamen, and carpel identity observed, resulting in a flower composed of only sepals. This example shows that redundancy occurs in the MADS-box gene family, which complicates reverse genetic strategies for gene function analysis. The SHP genes provide another example of MADS-box gene redundancy. shp1 and shp2 single mutants do not exhibit any phenotypic effect, whereas in the double mutant, development of the dehiscence zone is disturbed in the fruit, resulting in a failure to release seeds (Liljegren et al., 2000)[1].

It has been proposed that there are at least 2 lineages (type I and type II) of MADS-box genes in plants, animals, and fungi. Most of the well-studied plant genes are type II genes and have three more domains than type I genes from the N to the C terminus of the protein:intervening (I) domain (~30 codons), keratin-lik e coiled-coil (K) domain (~70 codons), and Cterminal (C) domain (variable length). These genes are called the MIKC-type and are specific to plants[2].

The MADS-box is a DNA binding domain of 58 amino acids that binds DNA at consensus recognition sequences known as CArG boxes [CC(A/T)6GG] (Hayes et al., 1988; Riechmann et al., 1996b). The interaction with DNA has been studied in detail for the human and yeast MADS-box proteins thanks to the resolved crystal structures (Pellegrini et al., 1995; Santelli and Richmond, 2000). The I domain is less conserved and contributes to the specification of dimerization. The K domain is characterized by a coiled-coil structure, which facilitates the dimerization of MADS-box proteins (Davies et al., 1996; Fan et al., 1997). The C domain is the least conserved domain; in some cases, it has been shown to contain a transactivation domain or to contribute to the formation of multimeric MADS-box protein complexes (Egea-Cortines et al., 1999; Honma and Goto, 2001)[1].

1.Parenicova L, de Folter S, Kieffer M, Horner DS, Favalli C, Busscher J, Cook HE, Ingram RM, Kater MM, Davies B, Angenent GC, Colombo L.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell. 2003 Jul;15(7):1538-51.
PMID: 12837945
2.Nam J, dePamphilis CW, Ma H, Nei M.
Antiquity and evolution of the MADS-box gene family controlling flower development in plants.
Mol Biol Evol. 2003 Sep;20(9):1435-47. Epub 2003 May 30.
PMID: 12777513