PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Carica papaya
bZIP Family
Species TF ID Description
evm.model.supercontig_100.3bZIP family protein
evm.model.supercontig_115.9bZIP family protein
evm.model.supercontig_1.202bZIP family protein
evm.model.supercontig_129.74bZIP family protein
evm.model.supercontig_131.79bZIP family protein
evm.model.supercontig_142.59bZIP family protein
evm.model.supercontig_146.5bZIP family protein
evm.model.supercontig_150.7bZIP family protein
evm.model.supercontig_158.7bZIP family protein
evm.model.supercontig_1782.2bZIP family protein
evm.model.supercontig_18.43bZIP family protein
evm.model.supercontig_194.18bZIP family protein
evm.model.supercontig_19.62bZIP family protein
evm.model.supercontig_209.8bZIP family protein
evm.model.supercontig_21.185bZIP family protein
evm.model.supercontig_21.207bZIP family protein
evm.model.supercontig_2.298bZIP family protein
evm.model.supercontig_244.3bZIP family protein
evm.model.supercontig_2741.1bZIP family protein
evm.model.supercontig_3.213bZIP family protein
evm.model.supercontig_32.14bZIP family protein
evm.model.supercontig_33.182bZIP family protein
evm.model.supercontig_34.221bZIP family protein
evm.model.supercontig_37.136bZIP family protein
evm.model.supercontig_38.34bZIP family protein
evm.model.supercontig_438.4bZIP family protein
evm.model.supercontig_49.112bZIP family protein
evm.model.supercontig_49.26bZIP family protein
evm.model.supercontig_50.129bZIP family protein
evm.model.supercontig_5.165bZIP family protein
evm.model.supercontig_52.101bZIP family protein
evm.model.supercontig_5.28bZIP family protein
evm.model.supercontig_53.3bZIP family protein
evm.model.supercontig_538.1bZIP family protein
evm.model.supercontig_5.51bZIP family protein
evm.model.supercontig_6.175bZIP family protein
evm.model.supercontig_62.4bZIP family protein
evm.model.supercontig_70.1bZIP family protein
evm.model.supercontig_81.160bZIP family protein
evm.model.supercontig_847.1bZIP family protein
evm.model.supercontig_85.93bZIP family protein
evm.model.supercontig_92.68bZIP family protein
evm.model.supercontig_9.313bZIP family protein
evm.model.supercontig_9.75bZIP family protein
evm.TU.contig_24967.6bZIP family protein
evm.TU.contig_30412.2bZIP family protein
bZIP Family Introduction

The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.

Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Jakoby M, Weisshaar B, Droge-Laser W, Vicente-Carbajosa J, Tiedemann J, Kroj T, Parcy F
bZIP transcription factors in Arabidopsis.
Trends Plant Sci, 2002. 7(3): p. 106-11.
PMID: 11906833