PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Amborella trichopoda
GATA Family
Species TF ID Description
evm_27.model.AmTr_v1.0_scaffold00001.217GATA family protein
evm_27.model.AmTr_v1.0_scaffold00002.171GATA family protein
evm_27.model.AmTr_v1.0_scaffold00004.55GATA family protein
evm_27.model.AmTr_v1.0_scaffold00008.33GATA family protein
evm_27.model.AmTr_v1.0_scaffold00011.164GATA family protein
evm_27.model.AmTr_v1.0_scaffold00017.219GATA family protein
evm_27.model.AmTr_v1.0_scaffold00019.427GATA family protein
evm_27.model.AmTr_v1.0_scaffold00022.186GATA family protein
evm_27.model.AmTr_v1.0_scaffold00025.412GATA family protein
evm_27.model.AmTr_v1.0_scaffold00025.413GATA family protein
evm_27.model.AmTr_v1.0_scaffold00033.200GATA family protein
evm_27.model.AmTr_v1.0_scaffold00039.68GATA family protein
evm_27.model.AmTr_v1.0_scaffold00056.57GATA family protein
evm_27.model.AmTr_v1.0_scaffold00057.99GATA family protein
evm_27.model.AmTr_v1.0_scaffold00064.40GATA family protein
evm_27.model.AmTr_v1.0_scaffold00106.107GATA family protein
evm_27.model.AmTr_v1.0_scaffold00147.19GATA family protein
evm_27.model.AmTr_v1.0_scaffold00148.27GATA family protein
evm_27.model.AmTr_v1.0_scaffold00155.58GATA family protein
evm_27.model.AmTr_v1.0_scaffold00155.59GATA family protein
GATA Family Introduction

GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.

GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.

Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.

Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008