PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Amborella trichopoda
B3 Family
Species TF ID Description
evm_27.model.AmTr_v1.0_scaffold00002.671B3 family protein
evm_27.model.AmTr_v1.0_scaffold00003.380B3 family protein
evm_27.model.AmTr_v1.0_scaffold00013.54B3 family protein
evm_27.model.AmTr_v1.0_scaffold00018.9B3 family protein
evm_27.model.AmTr_v1.0_scaffold00025.396B3 family protein
evm_27.model.AmTr_v1.0_scaffold00029.9B3 family protein
evm_27.model.AmTr_v1.0_scaffold00045.243B3 family protein
evm_27.model.AmTr_v1.0_scaffold00045.244B3 family protein
evm_27.model.AmTr_v1.0_scaffold00049.17B3 family protein
evm_27.model.AmTr_v1.0_scaffold00058.111B3 family protein
evm_27.model.AmTr_v1.0_scaffold00059.107B3 family protein
evm_27.model.AmTr_v1.0_scaffold00072.131B3 family protein
evm_27.model.AmTr_v1.0_scaffold00077.154B3 family protein
evm_27.model.AmTr_v1.0_scaffold00077.66B3 family protein
evm_27.model.AmTr_v1.0_scaffold00078.88B3 family protein
evm_27.model.AmTr_v1.0_scaffold00080.55B3 family protein
evm_27.model.AmTr_v1.0_scaffold00114.66B3 family protein
evm_27.model.AmTr_v1.0_scaffold00160.24B3 family protein
evm_27.model.AmTr_v1.0_scaffold00214.2B3 family protein
B3 Family Introduction

The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.

All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1). The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Swaminathan K, Peterson K, Jack T.
The plant B3 superfamily.
Trends Plant Sci, 2008. 13(12): p. 647-55.
PMID: 18986826

Note: In plantTFDB, B3 family includes LAV family, REM family, and RAV family (those do not contain AP2 domain).