PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Aquilegia coerulea
FAR1 Family
Species TF ID Description
Aqcoe0085s0001.1.pFAR1 family protein
Aqcoe1G062600.1.pFAR1 family protein
Aqcoe1G118200.1.pFAR1 family protein
Aqcoe1G128700.1.pFAR1 family protein
Aqcoe1G128700.2.pFAR1 family protein
Aqcoe1G129100.1.pFAR1 family protein
Aqcoe1G184300.1.pFAR1 family protein
Aqcoe1G204800.1.pFAR1 family protein
Aqcoe1G238500.1.pFAR1 family protein
Aqcoe1G264600.1.pFAR1 family protein
Aqcoe1G296300.1.pFAR1 family protein
Aqcoe1G300200.1.pFAR1 family protein
Aqcoe1G305700.1.pFAR1 family protein
Aqcoe1G330100.1.pFAR1 family protein
Aqcoe1G339000.1.pFAR1 family protein
Aqcoe1G347200.1.pFAR1 family protein
Aqcoe1G355200.1.pFAR1 family protein
Aqcoe1G355700.1.pFAR1 family protein
Aqcoe1G355700.2.pFAR1 family protein
Aqcoe1G355700.3.pFAR1 family protein
Aqcoe1G357900.1.pFAR1 family protein
Aqcoe1G361100.1.pFAR1 family protein
Aqcoe1G367500.1.pFAR1 family protein
Aqcoe1G433200.1.pFAR1 family protein
Aqcoe2G020000.1.pFAR1 family protein
Aqcoe2G053200.1.pFAR1 family protein
Aqcoe2G069000.1.pFAR1 family protein
Aqcoe2G071100.1.pFAR1 family protein
Aqcoe2G133900.1.pFAR1 family protein
Aqcoe2G141900.1.pFAR1 family protein
Aqcoe2G145000.1.pFAR1 family protein
Aqcoe2G145900.1.pFAR1 family protein
Aqcoe2G156500.1.pFAR1 family protein
Aqcoe2G166200.1.pFAR1 family protein
Aqcoe2G230300.1.pFAR1 family protein
Aqcoe2G272900.1.pFAR1 family protein
Aqcoe2G277700.1.pFAR1 family protein
Aqcoe2G340600.1.pFAR1 family protein
Aqcoe2G340600.2.pFAR1 family protein
Aqcoe2G340600.3.pFAR1 family protein
Aqcoe2G340600.4.pFAR1 family protein
Aqcoe2G361300.1.pFAR1 family protein
Aqcoe2G430200.1.pFAR1 family protein
Aqcoe2G430800.1.pFAR1 family protein
Aqcoe2G430800.2.pFAR1 family protein
Aqcoe2G430800.3.pFAR1 family protein
Aqcoe2G432800.1.pFAR1 family protein
Aqcoe2G432800.2.pFAR1 family protein
Aqcoe2G434100.1.pFAR1 family protein
Aqcoe2G434200.1.pFAR1 family protein
Aqcoe2G434200.2.pFAR1 family protein
Aqcoe2G434200.3.pFAR1 family protein
Aqcoe2G434200.4.pFAR1 family protein
Aqcoe2G434200.5.pFAR1 family protein
Aqcoe2G434200.6.pFAR1 family protein
Aqcoe2G434200.7.pFAR1 family protein
Aqcoe2G434600.1.pFAR1 family protein
Aqcoe2G434600.2.pFAR1 family protein
Aqcoe2G434600.3.pFAR1 family protein
Aqcoe3G011900.1.pFAR1 family protein
Aqcoe3G011900.2.pFAR1 family protein
Aqcoe3G011900.3.pFAR1 family protein
Aqcoe3G021400.1.pFAR1 family protein
Aqcoe3G102500.1.pFAR1 family protein
Aqcoe3G102500.2.pFAR1 family protein
Aqcoe3G102500.3.pFAR1 family protein
Aqcoe3G109600.1.pFAR1 family protein
Aqcoe3G164600.1.pFAR1 family protein
Aqcoe3G164600.2.pFAR1 family protein
Aqcoe3G185300.1.pFAR1 family protein
Aqcoe3G194000.1.pFAR1 family protein
Aqcoe3G194000.2.pFAR1 family protein
Aqcoe3G201700.1.pFAR1 family protein
Aqcoe3G222700.1.pFAR1 family protein
Aqcoe3G230000.1.pFAR1 family protein
Aqcoe3G230000.2.pFAR1 family protein
Aqcoe3G230000.3.pFAR1 family protein
Aqcoe3G244100.1.pFAR1 family protein
Aqcoe3G271500.1.pFAR1 family protein
Aqcoe3G292700.1.pFAR1 family protein
Aqcoe3G292700.2.pFAR1 family protein
Aqcoe3G292700.3.pFAR1 family protein
Aqcoe3G292700.4.pFAR1 family protein
Aqcoe3G359300.1.pFAR1 family protein
Aqcoe3G375000.1.pFAR1 family protein
Aqcoe3G382500.1.pFAR1 family protein
Aqcoe4G046300.1.pFAR1 family protein
Aqcoe4G085000.1.pFAR1 family protein
Aqcoe4G092200.1.pFAR1 family protein
Aqcoe4G105500.1.pFAR1 family protein
Aqcoe4G105500.2.pFAR1 family protein
Aqcoe4G105500.3.pFAR1 family protein
Aqcoe4G140600.1.pFAR1 family protein
Aqcoe4G146900.1.pFAR1 family protein
Aqcoe4G173500.1.pFAR1 family protein
Aqcoe4G189500.1.pFAR1 family protein
Aqcoe4G190200.1.pFAR1 family protein
Aqcoe4G191200.1.pFAR1 family protein
Aqcoe4G191200.2.pFAR1 family protein
Aqcoe4G218300.1.pFAR1 family protein
Aqcoe4G219400.1.pFAR1 family protein
Aqcoe4G267800.1.pFAR1 family protein
Aqcoe4G270700.1.pFAR1 family protein
Aqcoe4G311000.1.pFAR1 family protein
Aqcoe4G312500.1.pFAR1 family protein
Aqcoe5G001300.1.pFAR1 family protein
Aqcoe5G001300.2.pFAR1 family protein
Aqcoe5G001300.3.pFAR1 family protein
Aqcoe5G001300.4.pFAR1 family protein
Aqcoe5G028800.1.pFAR1 family protein
Aqcoe5G112700.1.pFAR1 family protein
Aqcoe5G112900.1.pFAR1 family protein
Aqcoe5G141100.1.pFAR1 family protein
Aqcoe5G165600.1.pFAR1 family protein
Aqcoe5G184200.1.pFAR1 family protein
Aqcoe5G259300.1.pFAR1 family protein
Aqcoe5G264500.1.pFAR1 family protein
Aqcoe5G270100.1.pFAR1 family protein
Aqcoe5G276000.1.pFAR1 family protein
Aqcoe5G299600.1.pFAR1 family protein
Aqcoe5G300500.1.pFAR1 family protein
Aqcoe5G314600.1.pFAR1 family protein
Aqcoe5G314600.2.pFAR1 family protein
Aqcoe5G314600.3.pFAR1 family protein
Aqcoe5G314600.4.pFAR1 family protein
Aqcoe5G320000.1.pFAR1 family protein
Aqcoe5G354500.1.pFAR1 family protein
Aqcoe5G354600.1.pFAR1 family protein
Aqcoe5G405300.1.pFAR1 family protein
Aqcoe5G410800.1.pFAR1 family protein
Aqcoe5G410800.2.pFAR1 family protein
Aqcoe5G410800.3.pFAR1 family protein
Aqcoe5G410800.4.pFAR1 family protein
Aqcoe5G435400.1.pFAR1 family protein
Aqcoe6G001800.1.pFAR1 family protein
Aqcoe6G022200.1.pFAR1 family protein
Aqcoe6G022200.2.pFAR1 family protein
Aqcoe6G022200.3.pFAR1 family protein
Aqcoe6G022200.4.pFAR1 family protein
Aqcoe6G023600.1.pFAR1 family protein
Aqcoe6G023700.1.pFAR1 family protein
Aqcoe6G204400.1.pFAR1 family protein
Aqcoe6G224800.1.pFAR1 family protein
Aqcoe6G226900.1.pFAR1 family protein
Aqcoe6G242900.1.pFAR1 family protein
Aqcoe6G242900.2.pFAR1 family protein
Aqcoe6G257700.1.pFAR1 family protein
Aqcoe6G278000.1.pFAR1 family protein
Aqcoe6G281600.1.pFAR1 family protein
Aqcoe6G309000.1.pFAR1 family protein
Aqcoe6G314500.1.pFAR1 family protein
Aqcoe6G325100.1.pFAR1 family protein
Aqcoe6G325100.2.pFAR1 family protein
Aqcoe6G325100.3.pFAR1 family protein
Aqcoe6G325100.4.pFAR1 family protein
Aqcoe7G147300.1.pFAR1 family protein
Aqcoe7G165300.1.pFAR1 family protein
Aqcoe7G165300.2.pFAR1 family protein
Aqcoe7G165300.3.pFAR1 family protein
Aqcoe7G165300.4.pFAR1 family protein
Aqcoe7G165300.5.pFAR1 family protein
Aqcoe7G165300.6.pFAR1 family protein
Aqcoe7G165300.7.pFAR1 family protein
Aqcoe7G166000.1.pFAR1 family protein
Aqcoe7G173600.1.pFAR1 family protein
Aqcoe7G180500.10.pFAR1 family protein
Aqcoe7G180500.11.pFAR1 family protein
Aqcoe7G180500.1.pFAR1 family protein
Aqcoe7G180500.2.pFAR1 family protein
Aqcoe7G180500.3.pFAR1 family protein
Aqcoe7G180500.4.pFAR1 family protein
Aqcoe7G180500.5.pFAR1 family protein
Aqcoe7G180500.6.pFAR1 family protein
Aqcoe7G180500.7.pFAR1 family protein
Aqcoe7G180500.8.pFAR1 family protein
Aqcoe7G180500.9.pFAR1 family protein
Aqcoe7G207700.1.pFAR1 family protein
Aqcoe7G236100.1.pFAR1 family protein
Aqcoe7G237000.1.pFAR1 family protein
Aqcoe7G237400.1.pFAR1 family protein
Aqcoe7G247400.1.pFAR1 family protein
Aqcoe7G247700.1.pFAR1 family protein
Aqcoe7G279100.1.pFAR1 family protein
Aqcoe7G279100.2.pFAR1 family protein
Aqcoe7G318100.1.pFAR1 family protein
Aqcoe7G330400.1.pFAR1 family protein
Aqcoe7G433800.1.pFAR1 family protein
FAR1 Family Introduction

We show that Arabidopsis FHY3 and FAR1, which encode two proteins related to Mutator-like transposases, act together to modulate phyA signaling by directly activating the transcription of FHY1 and FHL, whose products are essential for light-induced phyA nuclear accumulation and subsequent light responses. FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.

We next used a yeast one-hybrid assay to delineate the DNA sequences to which FHY3 and FAR1 bind. GAD-FHY3 or GAD-FAR1 fusion proteins (GAD, GAL4 transcriptional activation domain), but not GAD alone, activated the LacZ reporter genes driven by the FHY1 and FHL promoters. Deletion analysis narrowed down the FHY3/FAR1 binding site to a 39-bp promoter subfragment located on the "a" fragment for both FHY1 and FHL. Notably, these subfragments share a stretch of consensus sequence, 5'-TTCACGCGCC-3'. Mutating the core sequence "CACGCGC" of this motif (m2 and m3 for FHY1, m5 for FHL) abolished the reporter gene activation by both GAD-FHY3 and GAD-FAR1. Mutating the flanking sequences (m1 and m4) did not obviously affect the reporter gene activation by GAD-FAR1, but clearly reduced activation by GAD-FHY3. Thus, "CACGCGC" likely defines a cis-element that confers specific binding for FHY3 and FAR1 and is named FBS for FHY3-FAR1 binding site.

Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H.
Transposase-derived transcription factors regulate light signaling in Arabidopsis.
Science, 2007. 318(5854): p. 1302-5.
PMID: 18033885